YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC32F12.01c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEKAPELR VLSFNCWGLR FVSKYRTERL KAVGEKLAKC DYDIVLLQEV WSIYDFQEIR  60
   61 NLVSCNLVYS RFFHSAAMGA GLAMFSKFPI IESSMNKYPL NGRPQAFWRG DWYVGKGVAT 120
  121 ASLQHPSGRI ISLFNTHLHA PYGKGADTYL CHRLSQAWYI SKLLRAAVQR GHIVIAAGDF 180
  181 NIQPLSVPHE IITSYGLVND AWLSVYPDQV EHPPNRFSMN DKELVEIAGT TCDSRLNTWR 240
  241 ENISSKDMDD FVAKRLDYVF HSPSTCEAKN AKVVFLERVP KLDCSYSDHF AIETVLSIKL 300
  301 QPIPVQETRV SYSIIDDTLG ITYQYMARER LHMRLRIAHL LISIPLIIGV HVAIAWCDPA 360
  361 WLKVIILFFT VMLTIAAVVN GFCIGLLFGR WEFNGLLEFV AELKEQKLLC KQYLVDHPLP 420
  421 FAKS

Type	Start	End	Confidence
Cytoplasmic	1	334	0.88
Transmembrane Helix	335	355	0.93
Non-Cytoplasmic	356	364	0.73
Transmembrane Helix	365	388	0.93
Cytoplasmic	389	424	0.94