YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VTC1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQPLLQTT PGKRIALPVR VEPKVFFANE RTFLSWLSFA VVLGGLSVGL LNFGDRIGKI  60
   61 SAGLFTIVAI GTMGYALGIY HWRASAIRRR GSGPYDDRLG PTILCFVLLA AIITNFVLRM 120
  121 LF

Type	Start	End	Confidence
Cytoplasmic	1	32	0.91
Transmembrane Helix	33	53	0.94
Non-Cytoplasmic	54	59	0.79
Transmembrane Helix	60	82	0.90
Cytoplasmic	83	98	0.87
Transmembrane Helix	99	118	0.94
Non-Cytoplasmic	119	122	0.66