YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nic1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEYVKPRKN EFLRKFENFY FEIPFLSKLP PKVSVPIFSL ISVNIVVWIV AAIVISLVNR  60
   61 SLFLSVLLSW TLGLRHALDA DHITAIDNLT RRLLSTDKPM STVGTWFSIG HSTVVLITCI 120
  121 VVAATSSKFA DRWNNFQTIG GIIGTSVSMG LLLLLAIGNT VLLVRLSYWL WMYRKSGVTK 180
  181 DEGVTGFLAR KMQRLFRLVD SPWKIYVLGF VFGLGFDTST EVSLLGIATL QALKGTSIWA 240
  241 ILLFPIVFLV GMCLVDTTDG ALMYYAYSYS SGETNPYFSR LYYSIILTFV SVIAAFTIGI 300
  301 IQMLMLIISV HPMESTFWNG LNRLSDNYEI VGGCICGAFV LAGLFGISMH NYFKKKFTPP 360
  361 VQVGNDREDE VLEKNKELEN VSKNSISVQI SESEKVSYDT VDSKV

Type	Start	End	Confidence
Cytoplasmic	1	34	0.66
Transmembrane Helix	35	58	0.82
Non-Cytoplasmic	59	61	0.41
Transmembrane Helix	62	78	0.31
Cytoplasmic	79	102	0.50
Transmembrane Helix	103	126	0.86
Non-Cytoplasmic	127	138	0.53
Transmembrane Helix	139	164	0.85
Cytoplasmic	165	201	0.53
Transmembrane Helix	202	228	0.73
Non-Cytoplasmic	229	235	0.51
Transmembrane Helix	236	260	0.82
Cytoplasmic	261	280	0.53
Transmembrane Helix	281	308	0.84
Non-Cytoplasmic	309	327	0.57
Transmembrane Helix	328	349	0.91
Cytoplasmic	350	405	0.61