YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sod2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.63
Transmembrane Helix	11	29	0.94
Cytoplasmic	30	35	0.65
Transmembrane Helix	36	56	0.76
Non-Cytoplasmic	57	74	0.51
Transmembrane Helix	75	89	0.27
Cytoplasmic	90	102	0.57
Transmembrane Helix	103	125	0.90
Non-Cytoplasmic	126	131	0.57
Transmembrane Helix	132	154	0.79
Cytoplasmic	155	168	0.69
Transmembrane Helix	169	189	0.67
Non-Cytoplasmic	190	206	0.66
Transmembrane Helix	207	229	0.92
Cytoplasmic	230	242	0.64
Transmembrane Helix	243	274	0.73
Non-Cytoplasmic	275	324	0.55
Transmembrane Helix	325	345	0.89
Cytoplasmic	346	362	0.89
Transmembrane Helix	363	382	0.94
Non-Cytoplasmic	383	407	0.89
Transmembrane Helix	408	434	0.85
Cytoplasmic	435	468	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWRQLDIDK VHLALIVAGG FITFFCYFSE VFRKKLLVGE AVLGSITGLI FGPHAAKLVD  60
   61 PFSWGDHGDY LTVEICRIVL DVRVFASAIE LPGAYFQHNF RSIIVMLLPV MAYGWLVTAG 120
  121 FAYALFPQIN FLGSLLIAGC ITSTDPVLSA LIVGEGPLAK KTPERIRSLL IAESGCNDGM 180
  181 AVPFFYFAIK LLTVKPSRNA GRDWVLLVVL YECAFGIFFG CVIGYLLSFI LKHAQKYRLI 240
  241 DAISYYSLPL AIPLLCSGIG TIIGVDDLLM SFFAGILFNW NDLFSKNISA CSVPAFIDQT 300
  301 FSLLFFTYYG TIIPWNNFNW SVEGLPVWRL IVFSILTLVC RRLPVVFSVK PLVPDIKTWK 360
  361 EALFVGHFGP IGVCAVYMAF LAKLLLSPDE IEKSIYESTT VFSTLNEIIW PIISFVILSS 420
  421 IIVHGFSIHV LVIWGKLKSL YLNRKVTKSD SDLELQVIGV DKSQEDYV