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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: msp1
Protein type: Transmembrane
Type Confidence: 0.60
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISWFLSRF RIRTVAPSSF LKPRGLVYRP SQIRRRVSLL SLSGFHPYRA YSILGPKTPT  60
   61 AFNSANTVRF FSFSSISRLV FRSLRLPVAG FSLVAGGAAY IGAQVQRASD YTKDIFDKTF 120
  121 GILDSTWEKT RETVASVTNV QLPEISMPLW LEKILRLDEE SAERRRVLQA ERAKEHRSNS 180
  181 NDKQKSSDND EDPNDTTVGI GAALAASILS VDSVDGEDTL TADEKRKLAQ ESKEDRMMLF 240
  241 TKKMIEIRNI LQDIQDNNSA VTLPSIVVIG SQSSGKSSVL EAIVGHEFLP KGSNMVTRRP 300
  301 IELTLVHSAD TAIPYGEFSG VQLGKITDFS KIQHILTDLN MAVPSSQGVD DNPIRLTIYA 360
  361 SHIPNLSLID LPGYIQIHSE DQPADLDMKI SKLCEKYIRE PNIILAVCAA DVDLANSAAL 420
  421 RASRRVDPLG LRTIGVVTKM DLVPPSKAIS ILHNNNYPLH YGYIGVISRI VPTGRFSAGQ 480
  481 NLTDLVSTQE NSYFSTHQQF ADARIGNYLG IQSLRKCLIN VLEYTMSKNL QHTADSIRTE 540
  541 LEECNYQYKV QYNDRVLTAD SYIAEGLDIF KAAFKEFTQK FGKSEVRDLL KSSLNEKVMD 600
  601 LLAERYWTDD DISNWSKHTN ALDEHWKYKL DSCVSTLTRM GLGRVSTLLV TDSISKCIDE 660
  661 ITKASPFADH PAAMQYIMNA AQDILRRRFH ATSEQVENCV KPYKYDVEVN DDEWKSSRGQ 720
  721 AEKLLQRELG LCQSALEKIK NAVGSRRMNQ VLQYLEEQKT SSEPLPASYS TALLEQGRML 780
  781 QYLKMREDIL KLRISVLKSR ACKHKEAKYT CPEIFLNAVS DKLVNTAVLF INIELLSEFY 840
  841 YQFPRELDQR LIHSLSSEQL NAFVNENPRL KSQLQLQHKR QCLELALQKI NSLVILEQQA 900
  901 DSD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle