YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mok14
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.92
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	175	0.99
Transmembrane Helix	176	199	0.83
Cytoplasmic	200	939	0.90
Transmembrane Helix	940	958	0.86
Non-Cytoplasmic	959	974	0.76
Transmembrane Helix	975	995	0.95
Cytoplasmic	996	1003	0.85
Transmembrane Helix	1004	1025	0.89
Non-Cytoplasmic	1026	1034	0.67
Transmembrane Helix	1035	1054	0.94
Cytoplasmic	1055	1067	0.80
Transmembrane Helix	1068	1089	0.81
Non-Cytoplasmic	1090	1108	0.91
Transmembrane Helix	1109	1130	0.92
Cytoplasmic	1131	1150	0.92
Transmembrane Helix	1151	1171	0.91
Non-Cytoplasmic	1172	1189	0.87
Transmembrane Helix	1190	1212	0.92
Cytoplasmic	1213	1219	0.92
Transmembrane Helix	1220	1241	0.80
Non-Cytoplasmic	1242	1261	0.69
Transmembrane Helix	1262	1283	0.84
Cytoplasmic	1284	1290	0.87
Transmembrane Helix	1291	1313	0.86
Non-Cytoplasmic	1314	1340	0.91
Transmembrane Helix	1341	1361	0.93
Cytoplasmic	1362	1369	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIKKKSFLF QFLFGWIVLS SAQWLSVLDE AENLNSSFSL ESVDSFAPVR PRFIIDEDFA  60
   61 EDYNLTVDIL HRPLQENFDS FFPNVEAYVE SGNSNGDLMS DNGKLDDLNS RAAYSALKAL 120
  121 QNSYGSSHLY RFTPYELFGQ SIWIEEAPEV NHVGWSIMFD NLGRYFLLEL RGLREVTFAL 180
  181 FITFSIVPII TGILTVYIYK KKYCVIKFNK SGRSKKKDSW LKRSKDELLR TDSANLLTLN 240
  241 DNDEPVMIRH SCKRTCILFA TLEYNIPEWN IKIKIGGLGV MAELMSKTLK QYDLVWVVPC 300
  301 VGDITYPVAE TAPSLVVKVV NQDYEVKVFY HYKDNIKYVL LDSPIFRKRT SHDPYPPRMD 360
  361 DISSAIFYSV WNQSIAAIIR REKVDIYHIN DYHGALAPIY NLPEVIPCAI SLHNAEFQGL 420
  421 WPLQSSIDER EVCGLFNVSK TICREYIQFG NAFNLMHCGV SYVRRHQSGY GVVGVSNKYG 480
  481 QRSWVRYPVF WSLKKIGQLP NPDPTDIGLS VNPVNQQLPD FAEYASVRKE NKRKAQEWAG 540
  541 LTIDDEADLL VFVGRWSVQK GIDILADLAP TLLEKFNIQL IVVGPLIDLY GKFAAEKFMY 600
  601 IMERYPGRVF SKPEFVHLPP FIFEGADFAL IPSRDEPFGL VAVEFGRRGA ICIGSRVGGL 660
  661 GEMPGWWYSV ESSSTAYLLK QLEKSCTLAL KSTPEMRHKL RIAALQQRFP VDEWVALYDR 720
  721 LIRNCIKAHN KQQQRRSIKS FFSCITPNKP TKDVNDILSE KSAFSPADYE HSIDIREHTS 780
  781 YDANSMDNDS DEDNYEQAES IISSLSSSAL SELSYISESS MNIGSRLDER FIDANGVAIR 840
  841 DFSAELTYLT PENSKGKLSI DHFLNKVQSR WHDEEHHYYK TGFRKRVYKY LKIKDKKSKD 900
  901 VDPDDDLVNQ LPLNAYTKPR YKSAASTRLN IYQRILYLKV FTWPLYTIFL SLGQILSISS 960
  961 FQLSLLSGFE DNNQISLYVI TGVFILSTIV WWGLYRNLPS VHSLSLPFAV YALAFLFTGI1020
 1021 SSMSLPYHIR GWLSYAATWV YAIAAASGPL YFTLNFEDEH CSGLGSSITR ACVLQGVQQL1080
 1081 WLSFLWLWGT LSSRLDYNYK VLLQPINSVY VVAGVWPVSF VLLSVCILLY KGLPPFYRQK1140
 1141 PGSIPAFSKS LLHRKVVICF LISVINQNFW MSTLISQAWR FFWGSKLTKL WKIVVMTVSF1200
 1201 LVGAWLIIFY VLRKLSNKHT WMVPVLGLGF GAIKWMHVFW GTSNVGIFLP WAGIAGPYLS1260
 1261 RALWLWLGIL DSIQGIGNGL ILLQTLSRRH VTNTLMISQL AGSATSILAR FVSPTKTGPA1320
 1321 NVFPDLTGYT PVDRAKPVAN APFWICLILN VALCIMYLRC YHRENISRP