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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28381376, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHGLQGLCFR RAVIALALLL FHSVFAAPYS EDEEPWNLNQ NKNASSVLEY SGEWADHDFF  60
   61 PSPDNWRMSF ITVILDRWYD GDPSNNDIEK TPFEYDISEV SFRNGGDIVG LELSLDYLEG 120
  121 LGTQGIYIAG TPFVNMPWGA DQYSPLDYTI LDHHLGTIDQ WRSTITAMHE RGMYLVVDLT 180
  181 VATLGDLIGM VGHLNDTSGV DFNLNEYNAM WKTSEYRYVD FNFTNVYNTS CEYPRFWGED 240
  241 GGPVSIQFKG CYVSDFDHYG DTEAFGSHPD WQRQLSKFAS VQDRLRDWKP DVAEKLMHLS 300
  301 CLVISMLDVD GFRIDKATQM TADFIVDWSM YVRECAAKYN KKNFLIVGEV TGSSSYGSIY 360
  361 YNRGRQPDQR PPNVTAAFNY TSDESQYSLR DSDHYGFDGS AFHYSIYRAL LRFLGMDSKM 420
  421 EIDFDVSSVL TTAWNGIQIN EDAVNINTGT VEPLHMYGVA NHDVFRWGAI ENGTARLILG 480
  481 TMITSLLFPG IPLLYYGDEQ GMYVLDNSAN NYLYGRQAMN SARAWYIHGC YNGSATSYPT 540
  541 VDLSPAQRGC QDSWNYLDHF DIASAHRNVY RNIHSIRRHY LSLSEGWRFD HIANWTDDVY 600
  601 FPDSQPYASP MGLYSVLRGP MKEIQDFDSI TNASNVSKSE VWVLYANRND THLWSYDCTD 660
  661 EDSAIIGPWK SGTTLRNLIY PYDTIELEDS WNSSWGCIPN IELDPYAFKL YVPEEDFIEN 720
  721 DPIITSLTPE HDARVVASGN EIDLTIEFSR SMDCDSIKNA LSVVSSTRPK NTTAVIDVDS 780
  781 SFCRNYSEDA STSLHGQTAG RFAWYGTLTN IDPGIHRISL KSVPTSDFSS RTLSTDNFLI 840
  841 RVGSTNNPIV HYSANYSDTL LIMQDGDLYI NHSAPGAVLF RYSTDFQSHW SDWEEYNGGL 900
  901 TKVQASNWTG TRRQGWEGHH IHVQYWSDLG GSANHMQQSD YGFKYRRFLP HMFLEGDFNE 960
  961 YGYDSGVENR FLQKSDFYWE AGFISETYPA AIQLNVWGMN PDGIPDKTRV YGSQGNSTVL1020
 1021 SRSDPASLVG NNITIYHPPP HGYLSYKILL RDDDMIYRLA PSGEWGVSIA IYVLCIVIPP1080
 1081 LSAIVVSWAF KNSFYTVKFN KHGNNDLGKF YPLKSLVPFR KKNDLDSPAK VTPVVSGVSA1140
 1141 RKKKCVLIAT LEYDITDWKI RIKIGGLGVM AQLMAQHLKH EDLVWVVPCV GDVVYPEAEE1200
 1201 ASPIEVKIID QTYTINVYHH YLDNIKYVLL DAPVFRRQTS KEPYPARMDD LGSAIFYSAW1260
 1261 NQCIAEVIRR NPIDIYHIND YHGALAPCYL LPDIIPCALS LHNAEFQGLW PLRTPEEKEE1320
 1321 VCAVYNISQR VCTKYVQFGN VFNLLHAAVS YIRIHQKGFG AVGVSNKYGK RSWARYPIFW1380
 1381 GLKKIGKLPN PDPTDTDEIV DDKAVAITDI DPDMEKSKVE HKRLAQEWAG LEVNEKYDLL1440
 1441 VFVGRWSSQK GIDLIADIAP SLLESYKVQL ICVGPIIDLY GKFAAEKLDV LQKKYPTRVF1500
 1501 SQPKFTQLPP YIFSGADFAL IPSRDEPFGL VAVEFGRKGA LGIGARVGGL GQMPGWWYSV1560
 1561 ESSATPHLLK QFEQACQQAL SSSQRTRARL RARSAKQRFP VSQWKAKLEA LTDGCIKCSQ1620
 1621 KYGRNSRSRS SFYSLIHESF SRSSEVLPTS SDTNLDAKRA EEAEMIMIET PPTAEANTGA1680
 1681 KLDRSLSLGS RRGPGHTTED DASDGLDTIQ EESMTAGDST SGGSDISRYR AERLNPDSHS1740
 1741 PSEYSFDSGD YEFDPQRSYY YDDLFDDDTT IRNAPSFRPQ MGSFDAEHAV GATFSQDDLS1800
 1801 DPARSVDSDS VSPPLPPFVA GSNPNARNNN NPYFYGNLHT ESSLSLASVM SGKEKRDFSL1860
 1861 TRVEETFTDE DGQALRSFSE KLQKLNAKNS KDDLCIEQYL MKSERSFFHE RRAIKLGLQK1920
 1921 PNKLHVNELS SHSGTEESES LSNGQTSYDD IIAMTDESNY TQLGDDDFKT IHGLKKFMLF1980
 1981 KIYDWPIYSI FLALGQILAA TAYQLTLFTG TSNIQTYEIY SVCAFFIGAS FVWWFMFARL2040
 2041 PSYYVLSIPW LFYAVALFLV GLPAFDTVAP GRVWITNVAA WIYAIASASG SIFFSLNFGE2100
 2101 EGAVQTRIWV FRACLVQGVQ QVWSAALWYW GAHLNKRLTA GEANTFKMSP AIPSITWPLS2160
 2161 AVSILIFALL FKGLPEYYRQ LSGSIPAFYK SLLRRKLVVW FCISVFLQNF WLSSLNGRSW2220
 2221 SYLWDIGNIH QWQIFLLIVA FYIVLWALLL GVLAWISRTH SWIICVFGVG LGAPRWLQQF2280
 2281 WATSNIGLYL PWAGYSGPYL GRTLWLWLGV LDAIQSVGIG MILLQTLTRR HVASTLMTGQ2340
 2341 IVGAVATMIG RGASPNREGP ANVFIDFTKW NHGDGSSILA SAPFWINIIC QLAICVGYLA2400
 2401 FFRRENLSRP 

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