YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	map3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPIGIFYQF YAYFALVLSI PILYMQLRAR NIPCLLLLFW LTLTTLIYVV ESAIWSNPYA  60
   61 ETIRWMGYGL CDITSRIVTC SSIGIPASAF TLVLYLDTVI RRDHPLKRYE NWIWHVCLSI 120
  121 LLPLIIMAMM VPLESNRYVV ICMNGCYSSF YQTWYTLLFF YIPPCLLSFG GLFFVSRIVV 180
  181 LYWRRQRELQ QFFQRDSQLT SKRFLRLLCL AAVFFLGYFP LTIFMVVANG KLQQFLPFNH 240
  241 ELVEAWHQES ITYYPTTKVG LNDWVPPTVL YLMSLFFSTS GGWTEKVALI LWSLLVWLPF 300
  301 TKNTALGRHA QFKLDCCKSI ESTMAGKTLD STDFKEKCLV LERQWSKSSI PSDNSSELQD 360
  361 AAKYV

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.88
Transmembrane Helix	7	25	0.94
Cytoplasmic	26	33	0.79
Transmembrane Helix	34	55	0.91
Non-Cytoplasmic	56	72	0.94
Transmembrane Helix	73	96	0.89
Cytoplasmic	97	111	0.90
Transmembrane Helix	112	131	0.97
Non-Cytoplasmic	132	158	0.90
Transmembrane Helix	159	181	0.93
Cytoplasmic	182	203	0.94
Transmembrane Helix	204	228	0.90
Non-Cytoplasmic	229	281	0.87
Transmembrane Helix	282	300	0.68
Cytoplasmic	301	365	0.90