YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mam4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNLHTSIAV ASICLTSAFL GCVFGLGFFV WIIYGYSIGG FFAFLSLFHL LEFYITARFQ  60
   61 GSQLSWDSFI LNNGKAYWLA MLVGLLECLL SGGKSFAKVI NCLRFPSFLI NFIFSVYQTS 120
  121 ALGFLCLGQY LRSSAMVQAG QSFSHIVASK RNKDHLLVTD GIYAYVRHPS YVGFFIWALG 180
  181 TQMLLGNFVS TLLFSLVLWK FFSQRITTEE AYLVSFFGDS YEQYRKKVPS GIPLIP

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.58
Transmembrane Helix	8	31	0.88
Cytoplasmic	32	35	0.42
Transmembrane Helix	36	56	0.73
Non-Cytoplasmic	57	75	0.78
Transmembrane Helix	76	97	0.86
Cytoplasmic	98	107	0.77
Transmembrane Helix	108	131	0.85
Non-Cytoplasmic	132	174	0.88
Transmembrane Helix	175	198	0.88
Cytoplasmic	199	236	0.89