YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MAM2_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQPWWKDFT IPDASAIIHQ NITIVSIVGE IEVPVSTIDA YERDRLLTGM TLSAQLALGV  60
   61 LTILMVCLLS SSEKRKHPVF VFNSASIVAM CLRAILNIVT ICSNSYSILV NYGFILNMVH 120
  121 MYVHVFNILI LLLAPVIIFT AEMSMMIQVR IICAHDRKTQ RIMTVISACL TVLVLAFWIT 180
  181 NMCQQIQYLL WLTPLSSKTI VGYSWPYFIA KILFAFSIIF HSGVFSYKLF RAILIRKKIG 240
  241 QFPFGPMQCI LVISCQCLIV PATFTIIDSF IHTYDGFSSM TQCLLIISLP LSSLWASSTA 300
  301 LKLQSMKTSS AQGETTEVSI RVDRTFDIKH TPSDDYSISD ESETKKWT

Type	Start	End	Confidence
Cytoplasmic	1	15	0.64
Transmembrane Helix	16	31	0.66
Non-Cytoplasmic	32	48	0.73
Transmembrane Helix	49	69	0.91
Cytoplasmic	70	78	0.85
Transmembrane Helix	79	101	0.81
Non-Cytoplasmic	102	120	0.75
Transmembrane Helix	121	141	0.93
Cytoplasmic	142	161	0.87
Transmembrane Helix	162	182	0.94
Non-Cytoplasmic	183	206	0.91
Transmembrane Helix	207	230	0.85
Cytoplasmic	231	243	0.92
Transmembrane Helix	244	267	0.86
Non-Cytoplasmic	268	277	0.78
Transmembrane Helix	278	299	0.87
Cytoplasmic	300	348	0.96