YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC186.08c
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAGSKVFSN DSVRSSSFKS IKIVIVGAGN VGSTTAFTLL LSGLAAEIVI IDLNKKKAEG  60
   61 EAMDLNHAAP LSHETRVYLG DYKDCKDATA VVITAGKNQK PGETRMDLLK ANISIFKEIL 120
  121 REVTKYTKDA ILLVATNPVD VLTYATLKLT GFPAERVIGS GTIIDTARFQ YLIGKLYGLD 180
  181 PQSVNADIIG EHGDSELAVW SHASIAGLSL ADFCEESETK YDEQALNECF KETKNAAYDI 240
  241 IQRKGSTEYG VAAGLVRILA AIIRDENALL TVSGLDSYSN IGDVCFSMPR KLNKDGAHRI 300
  301 INAKLSKDED AKLVESVKSI KHAIESIGLN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.55
Transmembrane Helix	21	41	0.55
Non-Cytoplasmic	42	330	0.96