YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lag1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRKADEKH HMSSSSLTND RSYIRNLSNR KTSISRKVPI TRTLEDPSNF VAKDGTKLVQ  60
   61 APLFLLVWQK EICLSIIAIC FACLLSPSLR PYAEPFIFLS YKQPDGSYGK GPKDACFPIF 120
  121 WVIVFTAFRV IVMDYVFRPF VLNWGVRNRK VIIRFCEQGY SFFYYLCFWF LGLYIYRSSN 180
  181 YWSNEEKLFE DYPQYYMSPL FKAYYLIQLG FWLQQILVLH LEQRRADHWQ MFAHHIVTCA 240
  241 LIILSYGFNF LRVGNAILYI FDLSDYILSG GKMLKYLGFG KICDYLFGIF VASWVYSRHY 300
  301 LFSKILRVVV TNAPEIIGGF HLDVPNGYIF NKPIYIAFII LLFTLQLLIY IWFGMIVKVA 360
  361 YRVFSGEEAT DSRSDDEGED EEASSTNEDK

Type	Start	End	Confidence
Cytoplasmic	1	71	0.97
Transmembrane Helix	72	90	0.93
Non-Cytoplasmic	91	116	0.90
Transmembrane Helix	117	137	0.90
Cytoplasmic	138	157	0.80
Transmembrane Helix	158	176	0.90
Non-Cytoplasmic	177	200	0.91
Transmembrane Helix	201	221	0.85
Cytoplasmic	222	230	0.89
Transmembrane Helix	231	251	0.89
Non-Cytoplasmic	252	276	0.79
Transmembrane Helix	277	296	0.85
Cytoplasmic	297	304	0.68
Transmembrane Helix	305	324	0.65
Non-Cytoplasmic	325	333	0.75
Transmembrane Helix	334	354	0.95
Cytoplasmic	355	390	0.84