YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	erg12
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSLIVSSP GKTILFGEHA VVYGATALAA AVSLRSYCKL QTTNNNEIVI VMSDIGTERR  60
   61 WNLQSLPWQH VTVENVQHPA SSPNLDLLQG LGELLKNEEN GLIHSAMLCT LYLFTSLSSP 120
  121 SQGCTLTISS QVPLGAGLGS SATISVVVAT SLLLAFGNIE PPSSNSLQNN KALALIEAWS 180
  181 FLGECCIHGT PSGIDNAVAT NGGLIAFRKA TAHQSAMKEF LKPKDTLSVM ITDTKQPKST 240
  241 KKLVQGVFEL KERLPTVIDS IIDAIDGISK SAVLALTSES DKNSSAKKLG EFIVLNQKLL 300
  301 ECLGVSHYSI DRVLQATKSI GWTKLTGAGG GGCTITLLTP ECKEEEFKLC KESLLAHKNS 360
  361 IYDVQLGGPG VSVVTDSDSF FPQYESDFDF KKLNLLSKFN KYYI

Type	Start	End	Confidence
Cytoplasmic	1	18	0.47
Transmembrane Helix	19	34	0.36
Non-Cytoplasmic	35	101	0.53
Transmembrane Helix	102	118	0.30
Cytoplasmic	119	133	0.43
Transmembrane Helix	134	157	0.61
Non-Cytoplasmic	158	404	0.82