YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	isp5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.61
Transmembrane Helix	114	136	0.84
Non-Cytoplasmic	137	163	0.50
Transmembrane Helix	164	187	0.71
Cytoplasmic	188	195	0.45
Transmembrane Helix	196	214	0.92
Non-Cytoplasmic	215	223	0.61
Transmembrane Helix	224	247	0.86
Cytoplasmic	248	263	0.73
Transmembrane Helix	264	285	0.87
Non-Cytoplasmic	286	309	0.71
Transmembrane Helix	310	329	0.95
Cytoplasmic	330	335	0.66
Transmembrane Helix	336	354	0.71
Non-Cytoplasmic	355	361	0.67
Transmembrane Helix	362	383	0.85
Cytoplasmic	384	405	0.91
Transmembrane Helix	406	425	0.91
Non-Cytoplasmic	426	437	0.77
Transmembrane Helix	438	459	0.89
Cytoplasmic	460	478	0.84
Transmembrane Helix	479	501	0.87
Non-Cytoplasmic	502	514	0.83
Transmembrane Helix	515	535	0.96
Cytoplasmic	536	580	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNYGVSSIG TSLTPSPTGS IDEYTSKEVK HPEDVKVDAS YEKEEVGYGE LEVVPERGNL  60
   61 FQRWYRSFLP PEDGKPQKLK RTLTARHIQM IGIGGAIGTG VWVGSKNTLR EGGAASVLIC 120
  121 YSLVGSMVLM TVYSLGELAV AFPINGSFHT YGTRFIHPSW GFTLGWNYLA SFLATYPLEL 180
  181 ITASICLQFW ININSGIWIT VFIALLCFVN MFGVRGYGEV EFFVSSLKVM AMVGFIICGI 240
  241 VIDCGGVRTD HRGYIGATIF RKNAFIHGFH GFCSVFSTAA FSYAGTEYIG IAASETKNPA 300
  301 KAFPKAVKQV FIRVSLFYIL ALFVVSLLIS GRDERLTTLS ATAASPFILA LMDAKIRGLP 360
  361 HVLNAVILIS VLTAANGITY TGSRTLHSMA EQGHAPKWFK YVDREGRPLL AMAFVLCFGA 420
  421 LGYICESAQS DTVFDWLLSI SNLATLFVWL SINVSYIIYR LAFKKQGKSY DEVGYHSPFG 480
  481 IYGACYGAFI IILVFITEFY VSIFPIGASP DAGAFFQSYL CFPVVVIVFI AHALITRQKF 540
  541 RKLSEIDLDT GFSKYDRLEE SDKGPMTAKS LAKSVLSFCV