YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hmt1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.90
Transmembrane Helix	12	32	0.89
Cytoplasmic	33	51	0.94
Transmembrane Helix	52	75	0.87
Non-Cytoplasmic	76	85	0.81
Transmembrane Helix	86	107	0.91
Cytoplasmic	108	125	0.89
Transmembrane Helix	126	146	0.91
Non-Cytoplasmic	147	156	0.83
Transmembrane Helix	157	178	0.89
Cytoplasmic	179	260	0.96
Transmembrane Helix	261	280	0.83
Non-Cytoplasmic	281	309	0.74
Transmembrane Helix	310	329	0.73
Cytoplasmic	330	380	0.81
Transmembrane Helix	381	401	0.80
Non-Cytoplasmic	402	404	0.87
Transmembrane Helix	405	426	0.91
Cytoplasmic	427	487	0.96
Transmembrane Helix	488	512	0.79
Non-Cytoplasmic	513	830	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLRYNSPRL NILELVLLYV GFFSIGSLNL LQKRKATSDP YRRKNRFGKE PIGIISWWIL  60
   61 GIALTYVVDI SNLVIYALRV PNWWPCKTTV VCLILFLLFW IIVLISCADS KALPKNADSI 120
  121 LKAYRLSVLY VWAIDIVFET IFIVYSPHPN ETFQGIVLAD HVARLVLCVF ATAIYLTYRR 180
  181 KRHTHDPLDF EERQLTEESN VNENAISQNP STVQLGVSAS TSNFGTLKST SKKPSDKSWA 240
  241 EYFRSFSTLL PYLWPTKDYR LQFQIFICIV LLFLGRAVNI LAPRQLGVLT EKLTKHSEKI 300
  301 PWSDVILFVI YRFLQGNMGV IGSLRSFLWV PVSQYAYRAI STKALRHVLN LSYDFHLNKR 360
  361 AGEVLTALTK GSSLNTFAEQ VVFQIGPVLL DLGVAMVYFF IKFDIYFTLI VLIMTLCYCY 420
  421 VTVKITSWRT EARRKMVNSW RESYAVQNDA IMNFETVKNF DADDFENERY GHAVDIYLKQ 480
  481 ERKVLFSLNF LNIVQGGIFT FSLAIACLLS AYRVTFGFNT VGDFVILLTY MIQLQQPLNF 540
  541 FGTLYRSLQN SIIDTERLLE IFEEKPTVVE KPNAPDLKVT QGKVIFSHVS FAYDPRKPVL 600
  601 SDINFVAQPG KVIALVGESG GGKSTIMRIL LRFFDVNSGS ITIDDQDIRN VTLSSLRSSI 660
  661 GVVPQDSTLF NDTILYNIKY AKPSATNEEI YAAAKAAQIH DRILQFPDGY NSRVGERGLK 720
  721 LSGGEKQRVA VARAILKDPS IILLDEATSA LDTNTERQIQ AALNRLASGR TAIVIAHRLS 780
  781 TITNADLILC ISNGRIVETG THEELIKRDG GAYKKMWFQQ AMGKTSAETH