YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gms1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKGDDVKW KGIPMKYIAL VLLTVQNSAL ILTLNYSRIM PGYDDKRYFT STAVLLNELI  60
   61 KLVVCFSVGY HQFRKNVGKE AKLRAFLPQI FGGDSWKLAI PAFLYTCQNN LQYVAAGNLT 120
  121 AASFQVTYQL KILTTAIFSI LLLHRRLGPM KWFSLFLLTG GIAIVQLQNL NSDDQMSAGP 180
  181 MNPVTGFSAV LVACLISGLA GVYFEKVLKD TNPSLWVRNV QLSFFSLFPC LFTILMKDYH 240
  241 NIAENGFFFG YNSIVWLAIL LQAGGGIIVA LCVAFADNIM KNFSTSISII ISSLASVYLM 300
  301 DFKISLTFLI GVMLVIAATF LYTKPESKPS PSRGTYIPMT TQDAAAKDVD HKH

Type	Start	End	Confidence
Cytoplasmic	1	16	0.79
Transmembrane Helix	17	36	0.80
Non-Cytoplasmic	37	52	0.63
Transmembrane Helix	53	70	0.52
Cytoplasmic	71	151	0.50
Transmembrane Helix	152	170	0.91
Non-Cytoplasmic	171	183	0.91
Transmembrane Helix	184	204	0.94
Cytoplasmic	205	214	0.91
Transmembrane Helix	215	236	0.91
Non-Cytoplasmic	237	253	0.89
Transmembrane Helix	254	275	0.93
Cytoplasmic	276	281	0.76
Transmembrane Helix	282	300	0.75
Non-Cytoplasmic	301	303	0.70
Transmembrane Helix	304	323	0.92
Cytoplasmic	324	353	0.77