YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gma12
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFAPYLISA VVITTIILGG AWWTSAMDTK LQTKMKEIID QHTSTWTPVV SSVTSTQTDT  60
   61 LRVTISEVVS VTATLTETFT ATPTVTSVVH ALATTDPHPD NSKIVILMGS NFQNDANSPL 120
  121 HPFAQSIIKN RREYAERHGY KFEFLDADAY ASRVTGHLMP WVKVPMLQDT MKKYPDAEWI 180
  181 WWLDHDALVM NKDLNVVDHV LKHDRLNTIL TREAEYKSGA GIPADGFRTP KDQDAKDVHF 240
  241 IISQDFNGIN AGSLFIRNSE VGRWIVDLWF EPLYLDHIQG YAEQQAFSHM VFYHPQVYKH 300
  301 VGVVPLKAIN AYDFDDNIWG YDDGDLCIHF AGCNYFKNCP EKFLKYAQIL SSKQGSDWMS 360
  361 AQEKDHIQNL LKPSS

Type	Start	End	Confidence
Signal Peptide	1	26	0.54
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	375	0.87