YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GIT3_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHLDYTFNV SDATSTSSII IVSRRELANL RIMVIIASAI SIVFSLIAIF WRWSRRRTIR  60
   61 EQFHIALFSV LFIRSIVQMI HPCLALSDPF FWAPKHRCFT IGFFLLVLVR MTDYWIFINI 120
  121 LHNALLVLFP HVDTERRGLY RFRHTVFTLS FVIPLTIGGL AFTNKRNTFV NLQTRCYLPY 180
  181 TPVRFMFGLN WSFDYALSIA IIALQTCMFI SIRRKIKRFK KYSHQQTNVF DTLNVIDSYP 240
  241 TAPDQVALPP FPDTNSTLTY TPSNSQSIYS SQSQPSPYSR PLLSSVHPNL PPGSQSTPAN 300
  301 LNQSGIHFEQ DFRDSPNRTN GLEDHTSFKL SSPLTSDEDG ASSVLAAYGN DMQDDPLLKQ 360
  361 RKRILSQSKF LFAYPAIFIF MWILPQIQII VILAQPLHCS GSCKRFAFVA VFADNFVAIF 420
  421 IALSDFIWIC YRGYTYLKER DSSKSYWDQI KELTLKWWRG KFGEEK

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.86
Transmembrane Helix	32	53	0.92
Cytoplasmic	54	62	0.89
Transmembrane Helix	63	85	0.86
Non-Cytoplasmic	86	110	0.73
Transmembrane Helix	111	132	0.71
Cytoplasmic	133	141	0.89
Transmembrane Helix	142	163	0.90
Non-Cytoplasmic	164	190	0.97
Transmembrane Helix	191	212	0.90
Cytoplasmic	213	369	0.99
Transmembrane Helix	370	392	0.92
Non-Cytoplasmic	393	409	0.86
Transmembrane Helix	410	431	0.85
Cytoplasmic	432	466	0.94