YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ght3
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.71
Transmembrane Helix	8	27	0.77
Non-Cytoplasmic	28	54	0.89
Transmembrane Helix	55	77	0.86
Cytoplasmic	78	86	0.82
Transmembrane Helix	87	107	0.91
Non-Cytoplasmic	108	113	0.67
Transmembrane Helix	114	134	0.84
Cytoplasmic	135	146	0.75
Transmembrane Helix	147	169	0.87
Non-Cytoplasmic	170	180	0.73
Transmembrane Helix	181	200	0.89
Cytoplasmic	201	261	0.87
Transmembrane Helix	262	280	0.80
Non-Cytoplasmic	281	299	0.82
Transmembrane Helix	300	322	0.92
Cytoplasmic	323	329	0.85
Transmembrane Helix	330	349	0.94
Non-Cytoplasmic	350	366	0.84
Transmembrane Helix	367	391	0.86
Cytoplasmic	392	402	0.86
Transmembrane Helix	403	425	0.83
Non-Cytoplasmic	426	432	0.75
Transmembrane Helix	433	452	0.94
Cytoplasmic	453	555	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRFITSILV VFISMSGWLQ GADTGSISGI LGMRDFQSRF ADRYNPISNS YSYSAWRQAL  60
   61 LTGTINAGCL FGAMLSSPFT ERIGKKYSIC FFSGVYIIAE LLLVTAVPSW IQVLVGKILA 120
  121 GVGIGALSVL SPGYQSEVAP PQIRGAVVAT YQIFSTGAAL VAACINMGTH KLRKTASWRT 180
  181 SFGINMLWGI LLMVGVLFLP ESPRYLIYKG RDEEALRIMC NMAELSPESE IIQTNFNTIK 240
  241 SDIEIEMAGG KARWIEIFGK DIRYRTCLGF LVMLFRELIG NNYYFYYATQ VFKGTGMTDI 300
  301 FLPAVILGAI NFGTTFGALY TIDNLGRRNP LIFGAAFQSI CFFIYAAVGD RKLIYKNGTS 360
  361 DHRAGSVMIV FSCLFLFSYC CSWGPMGWVI VGETFPIRYR SKCASVATSG NWLGNFMISF 420
  421 FTPFINNAIG FKLGYIYACI NLFSSFMIFF LAKETKGLTL EEVNDLYMSN IKPWESYKYV 480
  481 REIESHRIHF SKEEEKRERE KSKGIRGQEE EFIENADEDN NDSSSSSGSV VSAVKPRRSA 540
  541 VSNDRFSEDS HPTYI