YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ght2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	26	0.95
Non-Cytoplasmic	27	62	0.89
Transmembrane Helix	63	83	0.91
Cytoplasmic	84	90	0.86
Transmembrane Helix	91	111	0.93
Non-Cytoplasmic	112	118	0.76
Transmembrane Helix	119	138	0.92
Cytoplasmic	139	150	0.82
Transmembrane Helix	151	173	0.89
Non-Cytoplasmic	174	181	0.83
Transmembrane Helix	182	203	0.90
Cytoplasmic	204	267	0.95
Transmembrane Helix	268	289	0.82
Non-Cytoplasmic	290	304	0.84
Transmembrane Helix	305	326	0.91
Cytoplasmic	327	334	0.88
Transmembrane Helix	335	357	0.87
Non-Cytoplasmic	358	367	0.86
Transmembrane Helix	368	391	0.86
Cytoplasmic	392	406	0.82
Transmembrane Helix	407	429	0.85
Non-Cytoplasmic	430	436	0.72
Transmembrane Helix	437	456	0.93
Cytoplasmic	457	531	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFKRGKNFT LVMLIFVSMA GWMFGADTGS IGGVTSMRDF RERYADRYDP ITDQYSLSSA  60
   61 RQGLLTGMVN VGSLFGCIIS SPIADRFGKR LSIIGFCAVY IIGIIVQVTA VPSWVQIMVA 120
  121 KIWTGIGIGA LSVLAPGYQS ETAPPSIRGT VVVTYQLFVT GGIFIAACIN MGTHKLHKTA 180
  181 QWRVSIGINL LWGIITMIGI LFLPESPRYL IQVGKDEEAV RVLSESAELF PDSEEVQNEY 240
  241 HRLKSSIDEE FAGGPCSWAS IFGKDIRYRT FLGMFVMSLQ QLTGNNYFFY YGFSVMQGAG 300
  301 INSPYLSAMI LDAVNFGCTF GGMYVLERFG RRNPLIIGGI WQSICFFIYS AVGSRALYHK 360
  361 NGTSNTRAGA VMIVMACLFI FGFAQTWAPA AYVIVGESYP VRYRSKCAAV ATASNWLWNF 420
  421 LISFFTPFIQ ASIGFKYGYV FASCNLTGAI VIFLFAKETK GLTLEEINEL YMSVIKPWES 480
  481 GNFKLNYSEQ KKVEKEKSRK GGARGESVEY VERASNTDSS PQYSSHEEDY A