YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ght1
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.87
Transmembrane Helix	7	30	0.81
Non-Cytoplasmic	31	58	0.90
Transmembrane Helix	59	77	0.93
Cytoplasmic	78	87	0.81
Transmembrane Helix	88	107	0.95
Non-Cytoplasmic	108	114	0.74
Transmembrane Helix	115	134	0.90
Cytoplasmic	135	146	0.78
Transmembrane Helix	147	169	0.89
Non-Cytoplasmic	170	177	0.81
Transmembrane Helix	178	199	0.89
Cytoplasmic	200	265	0.93
Transmembrane Helix	266	286	0.86
Non-Cytoplasmic	287	300	0.82
Transmembrane Helix	301	322	0.88
Cytoplasmic	323	328	0.74
Transmembrane Helix	329	349	0.88
Non-Cytoplasmic	350	363	0.72
Transmembrane Helix	364	387	0.86
Cytoplasmic	388	402	0.70
Transmembrane Helix	403	425	0.79
Non-Cytoplasmic	426	432	0.69
Transmembrane Helix	433	452	0.91
Cytoplasmic	453	557	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTLTITML LFVSMAGWMF GADTGSIGGI TNMRDFQSRF ADRYNPVTDT YSYSSARQGL  60
   61 ITGMVNVGSF FGCLISSPTT DRIGKRNSII GFCVIYLIGV IIQVTAVPSW VQIMVAKIWT 120
  121 GLGIGALSVL APGYQSEVAP PHIRGTIVVT YQLCVTAGIF IAACINMGTH KLYKTAQWRV 180
  181 SIGINLLWGI ITLVGVSFLS ESPRYLVSIG KDDEAIQVMC KNAELPPDSD IIQTEYKQIK 240
  241 SDCEAAVEGG PCTWPEIFGK EIRYRTFLGM AIMSFNQLTG CNYYFYYGTQ VFKGTGMESP 300
  301 YLASLILDAV NFGCTFGGLF VLEYCGRRVP LIIGGVWQSI CFFIYAAVGN RALTRKNGTS 360
  361 NHRAGAVMIV FSCLFIFSFA QTWGPAAYVI VGESYPIRYR SKCAAVATTS NWLWNFLISF 420
  421 FTPFITNSIG FKYGYIFASC NLCASIVTFL FAHESKGLTL EEINELYLSD AKPWMSRPKN 480
  481 LSEMAEAKEV EREETRPKGE SARYLEHADS NSDSEDLSSS ANNDVHEPVA RQDPFNENEV 540
  541 EKSRTRPSQE SYTTSSN