YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gcv1
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRSAALSIL KRQSSTAASS SLKRTPLYDL HLKEGATIVP FAGFSMPVQY KGQTISASHK  60
   61 WTREHSGLFD VSHMVQWFVR GENATAYLES ITPSSLKELK PFHSTLSAFT NETGGIIDDT 120
  121 IISKQDENTY YIVTNAACSE KDEANLKKHI ENWKGVELER VQGRALIAIQ GPETASVVQK 180
  181 LIPNVDFSVL KFGQSAYVDF KGVKCLFSRS GYTGEDGFEV SIPEEVSVDF ASTLLADTRV 240
  241 RPIGLGARDT LRLEAGMCLY GSDIDDTTSP VEGSLSWIIG KRRRKEGGFV GSSRILKELK 300
  301 DGPSRRRVGF IVEKVPARHG SAVEVDGVEV GQVTSGCPSP TLGKNIAMGY ISTGLHQVGT 360
  361 PAHIKVRNKL HPAQVVRMPF VETHYYK

Type	Start	End	Confidence
Signal Peptide	1	17	0.86
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	387	0.99