YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1539.07c
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFEGKTITC KAAVAWGAKE PLSIEDIQVA PPKAHEVRVK VDWSAVCHTD AYTLSGVDPE  60
   61 GAFPIVLGHE GAGIVESIGE GVINVRPGDH VILLYTPECK ECKFCRSGKT NLCSKIRETQ 120
  121 GRGLMPDGTS RFSCRDKTLL HYMGCSSFSQ YTVVADISLV AISHSAPLRS ICLLGCGVTT 180
  181 GFGAVTHSAK VESGSTVAVV GCGCVGLAAM QGAVAAGASR IIAIDINADK EVYAKKFGAT 240
  241 DFIDSSKVKD LVQYVIDVTD GGVDYAFDCT GNVTVMQQEL QFCHKGWGKL CVIGVAAAGK 300
  301 TLDFRPFLVV TGRQVLGSAF GGVKGRSELP NFVDEYMQGH FKVDEYITNE EPLKNINKAF 360
  361 DHMHEGKCIR CVVDMNKP

Type	Start	End	Confidence
Cytoplasmic	1	166	0.68
Transmembrane Helix	167	187	0.67
Non-Cytoplasmic	188	195	0.66
Transmembrane Helix	196	218	0.68
Cytoplasmic	219	378	0.59