YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC27B12.03c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVVLQYADK YVFDTFYGKI AESFDSSSSF ANTAVNSTTL GLAEKVNFAI TSGLLDRNNV  60
   61 WRQFTSLFLI TWIMGTLSYF LSASFAYYVY FDREEARRHP KFLKNQEHLE LMVALKNLPG 120
  121 MAILTAPWFL AEIRGYGYVY DKLDEYGYFY LFFSIALFLL FSDFLIYWIH RALHHRWLYA 180
  181 PLHKLHHKWI VPTPYSSHAF HYLDGYSQSL PYHMFPFFFP LNKYVYLLLF GSVNYWTVLI 240
  241 HDGKYFSNNA VVNGAAHHAA HHMYFNYNYG QFFTLFDRLC SSYRQPDQEL FDAELRNEKL 300
  301 QEQRIRFMET VQYTVEGKDD RTYASKKDN

Type	Start	End	Confidence
Non-Cytoplasmic	1	67	0.84
Transmembrane Helix	68	91	0.92
Cytoplasmic	92	111	0.87
Transmembrane Helix	112	131	0.90
Non-Cytoplasmic	132	147	0.86
Transmembrane Helix	148	169	0.94
Cytoplasmic	170	329	0.74