YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	erd2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFFSALGDM AHLAAIFLLL HRMKKSKTCS GLSLKSHLLF LLVYVTRYLN LFWRYKSLYY  60
   61 FLMRIVFIAS ESYICYLMLM TLRPTYDKRL DTFRTEYILG GCAVLALIYP TSYTISNILW 120
  121 TFSIWLESVA ILPQLFMLQR SGETESLTAH YLFAMCLYRG LYIPHWIYRI AVHKKVIGVA 180
  181 ILAGIIQTVL YGDFAVVYRR TVLQGKKFRL PA

Type	Start	End	Confidence
Cytoplasmic	1	30	0.58
Transmembrane Helix	31	51	0.86
Non-Cytoplasmic	52	59	0.80
Transmembrane Helix	60	80	0.93
Cytoplasmic	81	92	0.84
Transmembrane Helix	93	113	0.85
Non-Cytoplasmic	114	117	0.71
Transmembrane Helix	118	138	0.76
Cytoplasmic	139	146	0.74
Transmembrane Helix	147	168	0.83
Non-Cytoplasmic	169	175	0.70
Transmembrane Helix	176	198	0.87
Cytoplasmic	199	212	0.78