YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSMO_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTTSEVIVG TGFQAIRQQL AQMHPELNFV EQLWLAYYKW FDNDVVATGL MSFLLHELIY  60
   61 FGRCIPWMII DAMPYFRRWK IQPKKVPTLA EQWECTRLVL LSHFTVELPQ IWLFDPMCAT 120
  121 FGLSTSVPFP PVTKMIWQIT LFFFLEDTWH YWAHRLFHYG IFYRFIHKVH HRYSAPFGLS 180
  181 AEYAHPLEII LLGAGTVFVP LMWCYFTHDL HLVTMYIWIT LRLFQAVDSH AGYDFPWSLN 240
  241 KFLPIWAGAD HHDYHHMAFK DNFSSSFRWW DAVLKTDQNY HQFKARRLAA KYEAESKKAK 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	110	0.54
Transmembrane Helix	111	132	0.50
Non-Cytoplasmic	133	183	0.57
Transmembrane Helix	184	207	0.79
Cytoplasmic	208	300	0.69