YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	erg24
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGAVKKEK FEYEFFGPIG ALGVTVLTTV VSFGSFYICN EEGCPAKFSK ISHIFKKTPL  60
   61 FDQKSLILYL LWFSTLTLLW KCTNGKWAKG TPIDDKGTRL LYKINGFNSA CLILGVVCTS 120
  121 IYLLGASCME FIWDNFLQLM FAAYVFSVVL CTFCYVQSFF GKQQLAKGGT SGNILFDWFI 180
  181 GRSLNPRIGN FDIKCFCELR PGLILWVVFD IAFACHQYLV LGGRITDSMV LVIIFHTWYV 240
  241 LDSLINESAV LTTMDITTDG FGYMLSFGDL VWVPFLYSLQ ARYLAFHPVD LGLVKTLAIL 300
  301 CLQFLGYYIF RGANGQKNRF RSNPNDPKLK HLKFIQTKRG TKLLTSGWWG MARHINYFGD 360
  361 WIMAWAWCLP AGFGSPIPYF YVAYFGVLLV HRNARDDHKC RVKYGEDWEK YCKAVKYRII 420
  421 PYVY

Type	Start	End	Confidence
Cytoplasmic	1	14	0.91
Transmembrane Helix	15	38	0.86
Non-Cytoplasmic	39	64	0.92
Transmembrane Helix	65	84	0.88
Cytoplasmic	85	103	0.93
Transmembrane Helix	104	126	0.91
Non-Cytoplasmic	127	138	0.79
Transmembrane Helix	139	159	0.92
Cytoplasmic	160	205	0.86
Transmembrane Helix	206	240	0.60
Non-Cytoplasmic	241	259	0.43
Transmembrane Helix	260	281	0.76
Cytoplasmic	282	290	0.35
Transmembrane Helix	291	310	0.90
Non-Cytoplasmic	311	360	0.41
Transmembrane Helix	361	385	0.79
Cytoplasmic	386	424	0.62