YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	yam8
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFFSTHLIL KILFFWSITR NIFGATYTSL LLNNTINGNI NDQSTAYYNL TWEGNTAYNV  60
   61 SLTLSTCTAF DGANDLMLYI SNNTFDEALP LDNFTITASE NGLATIFVTG YSPLYIAVSS 120
  121 AFSQFAPNFF VESGESTLEG NNVINYELAA GIDTPFSQYN ATKFLFAQDT DFQAALLITG 180
  181 NLTTNETSII PSYEIYVNPS NSTYDNTFNK FSSSFCAFQN NPSTVNTNNA DRSMTLRGLG 240
  241 PFAKEQFYLK GLDPNVTYTA YLVEPNIGQP GGTVYPGVTF TTKTSPACQL IYDLQFCSEV 300
  301 AYAVPGNSSL FSASALAEWY DQQAYGYYQN FTYTLDLIPC NATSWSAYSL LKNCSDCANS 360
  361 YKNWLCASVI PRCADINDNS SYLIYKNYDS RYPLIDEVIQ PGPYKEVLPC SYLCYSLASS 420
  421 CPLDLGFACP KAGYGLEFSY GEVSNVTGLI TCNAPGVEFY ESGSALLNIS WRTFFISLIF 480
  481 WILFVE

Type	Start	End	Confidence
Cytoplasmic	1	7	0.41
Transmembrane Helix	8	25	0.35
Non-Cytoplasmic	26	468	0.89
Transmembrane Helix	469	485	0.56
Cytoplasmic	486	486	0.51