YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dsd1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESTATTTA VPPPAEESWN ADSEDVHQFY WTYTEEPHKS RRAAILKAHP EIASLNGYEP  60
   61 LTKWIVLGVV SLQFTCAYLL SQSSLLSWKF FLTAYFIGAF CNQNLFLAIH ELSHNLGFKK 120
  121 TLYNRAYCLF ANLPVGAPFA ASFRPYHMEH HAYQGVDGMD TDLPTRAELI LFDNVLGKAF 180
  181 FCTFQLLFYA FRPLVVRRLP FTLMHFWNII VQFSFDYLVV RYVGWRALAY FFMSSFLAGS 240
  241 LHPTAGHFLS EHYNMTRTRL IASGPGKETP LETFSYYGPL NFFVYNAGYH IEHHDFPYVA 300
  301 WTRIGKVREL APEFYDNIPD CKSWCGIIYQ FITDSNVGMW CRVKRKQKHA DIPTKSMHLH 360
  361 VS

Type	Start	End	Confidence
Cytoplasmic	1	60	0.93
Transmembrane Helix	61	81	0.85
Non-Cytoplasmic	82	89	0.69
Transmembrane Helix	90	109	0.89
Cytoplasmic	110	122	0.82
Transmembrane Helix	123	143	0.82
Non-Cytoplasmic	144	168	0.86
Transmembrane Helix	169	191	0.75
Cytoplasmic	192	200	0.68
Transmembrane Helix	201	220	0.80
Non-Cytoplasmic	221	226	0.68
Transmembrane Helix	227	249	0.87
Cytoplasmic	250	362	0.83