YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cwl1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQHSLNPF ESGSVTASDV AAAKSGAEDL VNTLTAHTVH PSTELPSATS FPSALPNSEN  60
   61 PVIQNISSSS SEPHHTSQST PGETSSPVCP VSGAHGGADK KCPALEAGCP FTNTTKQNVD 120
  121 PEISNALWSV LTWKNTSCSF STLMSILALV YVPSWINLPR LFFRTFRYVF LITSIIEFGG 180
  181 LFASNGKRGV LSHFRSSYIT CDSKALDRIV NSIVDIFNVM LIQFQRILFA ESPILTFTAS 240
  241 VAAFIEFFLS GFLSYKSLFV WNVLFAFILP RLYVCNERSI KHLVASLERS GDKLKKQATE 300
  301 TINTTVNK

Type	Start	End	Confidence
Cytoplasmic	1	135	0.94
Transmembrane Helix	136	156	0.86
Non-Cytoplasmic	157	164	0.80
Transmembrane Helix	165	186	0.88
Cytoplasmic	187	226	0.91
Transmembrane Helix	227	249	0.82
Non-Cytoplasmic	250	256	0.63
Transmembrane Helix	257	275	0.83
Cytoplasmic	276	308	0.91