YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ctr5
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSKMSMSG MSGMGMGSSS NSSAATCRMS MLWNWYIHDS CFLAKSWHIN TGNKFAGSII  60
   61 GIFFFAVAIE GLSLVQRMFD RWIVAHSNGK TLSGPLRIFF PSSTVHVTVW QQLIRAAMYS 120
  121 SFYLSATILM LIVMSFNGYA ILFGFVGAWI GFFLFASDTY GTPSTGTGCC ESR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.74
Transmembrane Helix	12	32	0.76
Non-Cytoplasmic	33	54	0.77
Transmembrane Helix	55	75	0.93
Cytoplasmic	76	121	0.64
Transmembrane Helix	122	156	0.75
Non-Cytoplasmic	157	173	0.51