YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ctr4
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFSAAKQS LGNSLIKLGT SMAQNSQGPV DDSSLSQLEN LLPPLQILTA RAAMAAMNMS  60
   61 NDTSMSGMNM TNSTTPMSGM NMTNSTTSMS GMNMSNSTTS MSGMNMTNTT TTAKASSCKL 120
  121 SMYWNWYTID ACFITKHWHI TSKHMFVGSI FGIIFMMMAL ELVRRGQREF DRWCVRRFSP 180
  181 ASNSCCHSGA PVHSGPSMAL RIFLHFLRSC FYLVQYIVAY IAMLLAMYYN GYVILFLFCG 240
  241 TFFGYFLFGA DTISTKASSS VQTKTIVQVA DEKHEHDSSQ YSDTTPTTE

Type	Start	End	Confidence
Cytoplasmic	1	122	0.59
Transmembrane Helix	123	138	0.36
Non-Cytoplasmic	139	143	0.68
Transmembrane Helix	144	163	0.91
Cytoplasmic	164	203	0.87
Transmembrane Helix	204	224	0.86
Non-Cytoplasmic	225	231	0.59
Transmembrane Helix	232	250	0.93
Cytoplasmic	251	289	0.88