YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX5_SCHPO
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.33
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLCTRNAA TVSAAATNAL QKEQPSGEAM IARPRLVDLD KRWGIMSQEE KDGLITDLYA  60
   61 RQKQPWTTLS IEEKKAAYWI AFGEHGPRAF SHISQKTVFW GTVAGLTIGV VLFGLIRTQA 120
  121 APSPRTMTRE WQEKSNEYMK ENKINPISGE ASEGFKGRGQ ISGGIFSPSE KDKK

Type	Start	End	Confidence
Signal Peptide	1	19	0.39
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	96	0.55
Transmembrane Helix	97	119	0.83
Cytoplasmic	120	174	0.48