YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COQ6_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTISPTLGI YTRKFASQKI LQRQFDVVIV GSGPVGLALA AGLQSNPVTQ SLKVGLLDIQ  60
   61 DTMKLKDWKF ETYSNRCSSL TNHTRMFFDK IGAWDFARKD RIQPFQHILA SDGLTNSSIH 120
  121 LDQKPGSEPM AFMSENVNLQ YALLNSIIDK MNNNIKKPNL EFLMPCTITK LSKGENIYRT 180
  181 HIHTTTHGEL TTKLLIGADG RNSIVRKYAN ISMPGWNYLT HAVVGTLKID PLKGPAVAFQ 240
  241 RFLPTGPLAY LPLPDNNATF VWSTRPHIAS KLLRLPEETF VKFLNASFRL DYPDLSYLYQ 300
  301 MDFSEPSKVN EQLDWRLQVK RNSNMQVPPV ITEIVSGSRA AFPLRLAHVD EYVKEGIALC 360
  361 GDAAHNTHPL AGQGLNTGIQ DVESLISALS FAIKHGQDIG SVFSLQPYFR DRYFKNHVYL 420
  421 GVVDKFHKLY AMENPVVTSV RTLGLSLFDR SASLKNFILS TVANGI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.70
Transmembrane Helix	21	42	0.66
Non-Cytoplasmic	43	466	0.99