YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19114131
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.90
Transmembrane Helix	78	96	0.83
Non-Cytoplasmic	97	105	0.76
Transmembrane Helix	106	128	0.83
Cytoplasmic	129	148	0.92
Transmembrane Helix	149	169	0.83
Non-Cytoplasmic	170	174	0.68
Transmembrane Helix	175	193	0.73
Cytoplasmic	194	201	0.63
Transmembrane Helix	202	220	0.90
Non-Cytoplasmic	221	227	0.68
Transmembrane Helix	228	248	0.79
Cytoplasmic	249	274	0.79
Transmembrane Helix	275	293	0.69
Non-Cytoplasmic	294	298	0.56
Transmembrane Helix	299	315	0.55
Cytoplasmic	316	335	0.67
Transmembrane Helix	336	356	0.65
Non-Cytoplasmic	357	358	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIKPIASPA RYFLRTPSWS AVAIFQAVKI KPLQLRTNSS NSVTPNLISP SKKSWKDLFS  60
   61 KRWQYYAEIS RAGSPTGTYL LYSPCTWSIL MAAYAYDSSL VNVTKMLALF GVGSFLMRSA 120
  121 GCVINDLWDR ELDAKVERSK SRPLASGKLS VRQAISLLSV QLTASLGILL QLNPYTIKLG 180
  181 VASLVPVCIY PAMKRITYYP QVVLGLTFGY GAVMGWPALA GEACMNWSVV APLYLSTISW 240
  241 IVLYDTIYAH QDKRDDVKAN IYSTALRFGD NTKPVLCGLA ALQIATLATA GIMNGQGPVF 300
  301 YTLGVAGAAY RLSSMIYKVD LDDPKDCFRW FKRNSNTGYL VAAAIALDWL AKSFIYDS