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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHO2_SCHPO
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNQIPSASS AADFGSSKST SVDAVPNMDK SSSVRRKNID SNGLQQTNQI EQAESSLNAE  60
   61 ADHSEPERYG CTPSGKVFLL PKEQENRRSI LETVDPRFSK TPWDWIVISS ILAQVLLFFM 120
  121 TTGAVRRYSM MLCFFFWRIS YDAGIGFLLH MQSNHRKVVT WISDFGFFDK ENHPKLYDLT 180
  181 KKQLISKMDS SYNYDTSPLE FNSWLVFRHF VDLILMCDFC SYILMGLAWT CWPKVNIILQ 240
  241 FLRIFGGIAL IVFNYWVKMD AHRVVRDYAW YWGDFFFLLR SSLVFNGVFE LAPHPMYSVG 300
  301 YAGYYGMSLL TGSYAVLFAS ILAHAAQFGF LLFVENPHIE RTYGTDINHA RLSPRGEDNE 360
  361 FELPPEHDLV GFVNFDFTRI SDVALLIIAL YSIFIILLSS NSHYSQFWAI FQAFVWRFLH 420
  421 SIIHAFILFY QSKSKAWTKH FIRNGESAAY AWSQWKGLYN LTLNMSYISF VMAAWKLYHL 480
  481 PSNWTYGLVS LRHALGFGLI ALHIYTSVSI YEDLGQYGWF YGDFFLPSRS PKLVYQGIYR 540
  541 YVNNPERFLG CSAYWGLALI SSSAWIFLIA ILAQLSNLAI IRLVEQPHMQ KVYGNTLRKE 600
  601 AGISKLIKQA TSEKGNILPK TVETHMKALT TSVDKVLDQT AEALEEFVNT APPKVQELLK 660
  661 GTESNLRKNA QLAILKLFAP QLSSSTHFDY KLEIKGIDNN QVLLGHPITV CWTASPNHEI 720
  721 NDWIGLYKLS DNASDLYTQT SSEGRWSAID ANGYTSHCSS IKSLSNDKNS GEVEFSGDLL 780
  781 FWETGTFEFR YHYGGKHLVM AKTEPFVITA TSMNTTDVDE VSAYLLKSIK FCDPNITPHD 840
  841 GDASLCDISE GSARKLTSII KYSFGIDLSY RVVQVDGSCS ALSRRIVNSL KILQSFDGPS 900
  901 GAKDD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle