YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cho1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLILYPKPT SYLYQPFIKA YFSLNMAIFE INNSFLICAV SIALNPLLWN IAARSEYNHK  60
   61 TLTKLANGDS KKACYMLAAC IFVAGIVRDL IYQNALKQQP TLGIFMNPLV QGIAKLIFCF 120
  121 GSVLVLSSMY KLGLVGTYLG DYFGFLLPER VSGFPFNVND NPMYNGSTLC FLSTALRYGK 180
  181 VAGLLLTLEV FFVYRIALKF EEPFTAKIYA ARDSKQAKKS E

Type	Start	End	Confidence
Cytoplasmic	1	20	0.49
Transmembrane Helix	21	53	0.65
Non-Cytoplasmic	54	72	0.43
Transmembrane Helix	73	92	0.87
Cytoplasmic	93	111	0.44
Transmembrane Helix	112	134	0.82
Non-Cytoplasmic	135	175	0.50
Transmembrane Helix	176	194	0.51
Cytoplasmic	195	221	0.79