YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cdc16
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSIDCKRLQ KLAPKSPENQ SKCISRLRYM VMLDQVESDE GGNSSTRPYV WAVLLNAPPR  60
   61 NADEYIRYVR QGPSPMAQKI QNDVSRTLVV ESQFHSRVSQ SSLSRLLNAY VWKRGALYVQ 120
  121 GMNVLASPFL YACKSENQAF QFFDRLLQNE CPLYVLPNID GVHRGAKLLD KCLEVLDHRL 180
  181 YTYLLSKGLT AKIYALPSIL TLSACTAPLS EALTIWDFLF AYGIHLNILC VIAQMFIFRE 240
  241 QLIDHPSPMT LLRTFPPLNA KNIMKITILL ISKLPPELYN LLARHAWDSE AGVLIDRLT

Type	Start	End	Confidence
Cytoplasmic	1	192	0.82
Transmembrane Helix	193	210	0.73
Non-Cytoplasmic	211	217	0.66
Transmembrane Helix	218	238	0.84
Cytoplasmic	239	299	0.77