YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	bsu1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.98
Transmembrane Helix	81	97	0.94
Non-Cytoplasmic	98	115	0.77
Transmembrane Helix	116	138	0.90
Cytoplasmic	139	147	0.87
Transmembrane Helix	148	167	0.92
Non-Cytoplasmic	168	173	0.75
Transmembrane Helix	174	195	0.91
Cytoplasmic	196	205	0.77
Transmembrane Helix	206	227	0.88
Non-Cytoplasmic	228	237	0.83
Transmembrane Helix	238	258	0.92
Cytoplasmic	259	307	0.93
Transmembrane Helix	308	331	0.82
Non-Cytoplasmic	332	344	0.80
Transmembrane Helix	345	365	0.91
Cytoplasmic	366	386	0.90
Transmembrane Helix	387	407	0.93
Non-Cytoplasmic	408	417	0.69
Transmembrane Helix	418	435	0.60
Cytoplasmic	436	444	0.49
Transmembrane Helix	445	468	0.86
Non-Cytoplasmic	469	479	0.56
Transmembrane Helix	480	502	0.92
Cytoplasmic	503	526	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKIASLFS PSETASKDQH ENVAEDLELG TASSQSDGIH ETNSEYDEKK REESPEVIDI  60
   61 SNLISSDHPA HPQNWHWAKR WSIVFMFCLM QIYVIWTSNG FGSIEYSVMA QFNVSAQVAT 120
  121 LCLSMNILGS GLGPMFLGPL SDIGGRKPVY FCSIFVYTVF NISCALPRNI VQMIISHFII 180
  181 GVAGSTALTN VAGGIPDLFP EDTAGVPMSL FVWACAGGAI GAPMATGVDI NAKYGWRWLY 240
  241 YINIIVGGFF LIVILIIPET LPIKVITRYE NAKGRIVEGI PKNNLKEVLK KCKFVTTMGF 300
  301 RMMLTEPIIL SMGLYNFYAY GISYFFLTAI WPVFYDTYKM SEMGASCTYL SGFVASTLLF 360
  361 LYQPIQDWIF RRDKAKNNGV ARPEARFTSA LFITLLFPAG MFLFAFTCHP PFPWMSPIVG 420
  421 NSMVTVANGH NWMCILNYLT DSYPLLSGSA VAAFTLPSFI GATVFAHVSQ IMFNNMSVKW 480
  481 AVATMAFISI SIPFIIYTFY FFGQRIRALS SLTGNKALKY LPLENN