YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	bgs4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	518	0.92
Transmembrane Helix	519	539	0.89
Cytoplasmic	540	556	0.78
Transmembrane Helix	557	577	0.92
Non-Cytoplasmic	578	595	0.73
Transmembrane Helix	596	616	0.95
Cytoplasmic	617	627	0.77
Transmembrane Helix	628	648	0.92
Non-Cytoplasmic	649	683	0.89
Transmembrane Helix	684	706	0.77
Cytoplasmic	707	727	0.75
Transmembrane Helix	728	753	0.67
Non-Cytoplasmic	754	760	0.59
Transmembrane Helix	761	784	0.84
Cytoplasmic	785	1361	0.95
Transmembrane Helix	1362	1384	0.85
Non-Cytoplasmic	1385	1419	0.88
Transmembrane Helix	1420	1441	0.88
Cytoplasmic	1442	1501	0.84
Transmembrane Helix	1502	1525	0.77
Non-Cytoplasmic	1526	1533	0.58
Transmembrane Helix	1534	1552	0.90
Cytoplasmic	1553	1621	0.93
Transmembrane Helix	1622	1644	0.93
Non-Cytoplasmic	1645	1681	0.90
Transmembrane Helix	1682	1706	0.86
Cytoplasmic	1707	1715	0.73
Transmembrane Helix	1716	1738	0.87
Non-Cytoplasmic	1739	1818	0.60
Transmembrane Helix	1819	1841	0.81
Cytoplasmic	1842	1875	0.88
Transmembrane Helix	1876	1897	0.95
Non-Cytoplasmic	1898	1955	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNNENVSG ITGHDAVSDD QYAYDSEVYD DQNAYQRQPA DAYSNEEFLD QADYDSMYGE  60
   61 GYNGYDYPTG VTESYGDEYT PVDTASSGIN QYSTEKGKFT RPSDEYESEY SDYNAQPSDA 120
  121 NNFYNLRGDG RYNAYDPSSD SLANVYNSVP YGSSPYDFSN SSFVGNSGSG TPLDGDSGSF 180
  181 YADSANLTNR EPYPAWTPEN ELPLTKEEIE DIFIDLTNKL GFQRDSMRNM YDFFMCLLDS 240
  241 RASRMTPDQA LLTLHADYIG SDIANYKKWY FASQMDREDA VGLANVGIYG GKVTSIKEKG 300
  301 KFFSRNKKAP KVVKPPRKSR FKRKKKKEQP EEAEDEYIDV NTDDSLESAE YRWRSHMRSM 360
  361 TQFERAQQIA LWLLLWGEAN NVRFMPEVIA FLFKCAYDYI ISPEAQNVTE PVPEGYYLDN 420
  421 IVSPLYQYMH DQQFEIINGK YVRRERPHDQ LIGYDDINQL FWHAEGIARL IFEDGTRLID 480
  481 IPASERFHRL PEVQWNRAFY KTYYESRSWF HLITNFNRIW VIHFGMFWYF TAFNSPTLYT 540
  541 KPFHQRDGPK PTGASQWAAV ACTSVVSCII MAAASLCEYL FVPRRFPGSK PIWKRLCIIV 600
  601 LIAIINLIPI VYIFGFSSKH QQRSGRRIAV GVVAFLMSIA TYVYFSLVPL QSTFGKLSVK 660
  661 DSRKYLANKY FTSNFAPLKF DNQALSVIIW VCVFTCKFAE SYFFLTLSIR DPIIVLSTMR 720
  721 PYLCSIYWAG SRLCFVQPRI ILGIMYFTDL ILFFLDTYLW YIIFNTIFSV LRSFVLGISI 780
  781 LTPWRNIFSR MPQRIYGKIL ATNDMEIKYK PKILISQIWN AIVISMYREH LLSIDHVQRL 840
  841 LYHQVPAEEG RRTLRTPTFF VSQDDNIVHT TFFPANSEAE RRLSFFAQSL ATPIPEPVPV 900
  901 DNMPTFTVLI PHYAEKILLS LREIIREEDQ LSRVTLLEYL KQLHPVEWDC FVKDTKILVE 960
  961 ENAPYENDSV SEKEGTYKSK VDDLPFYCIG FKSAMPEYTL RTRIWASLRS QTLYRTISGF1020
 1021 MNYSRAIKLL YRVENPEIVQ MFGGNTDRLE RELDRMARRK FKLVVSMQRY AKFTKEEYEN1080
 1081 AEFLLRAYPD LQIAYLDEDP PEEEGAEPQL FAALIDGHSE IMENERRRPK YRIRLSGNPI1140
 1141 LGDGKSDNQN MSLPFYRGEY IQLIDANQDN YLEECLKIRS VLAEFEEMET DNVNPYSESA1200
 1201 RERNKHPVAI LGAREYIFSE NIGILGDVAA GKEQTFGTLF SRTLAQIGGK LHYGHPDFLN1260
 1261 GIFMTTRGGV SKAQKGLHVN EDIYAGMNAM LRGGRIKHCE YFQCGKGRDL GFGSILNFNT1320
 1321 KVGTGMGEQM LSREYYYLGT QLQLDRFLSF YFAHPGFHLN NMFIMLSVQL FMVVLINLGA1380
 1381 IYHVVTVCYY NGNQKLSYDT SIVPRGCYQL GPVLSWLKRC VISIFIVFWI SFIPLTVHEL1440
 1441 IERGVWRATK RFFKQIGSFS PLFEVFTCQV YSQAITSDLA YGGARYIGTG RGFATARLPF1500
 1501 SILYSRFAVP SIYIGARFLM MLLFGTMTVW VAHLIYWWVS IMALCVAPFL FNPHQFDWND1560
 1561 FFVDYREFIR WLSRGNSRSH ANSWIGYCRL TRTRITGYKR RVLGQPSDKI SMDTPRAKFT1620
 1621 NVFFSDVLIP ALLAAGAIIP YFFINSQPGN PMFITDPNNP SPYVHDTKTG TNPILRLVII1680
 1681 SLIPIAAGFG MSGFFGGMAC CLGPAFGLCC KKFPSIFAAI AHTIQIFIFI AIFEVCWFLD1740
 1741 GWSLPKTVLA FCAVTAIHRF IFKILTLLCL SREVKQDSAN ISWWSGKWYG KGYGYHAFTL1800
 1801 PAREFVCKAI ELNLFATDFF LGHLLLFFML PVICIPYIDR WHSVLLFWLR PSRQIRPPIF1860
 1861 STKQNRLRKR IVRRYSALYF SILVIFLILI IVPLAAGAEI RQGLTASEAV AKGAVGWNQT1920
 1921 NSSIGSGIIQ PRDTNYTANY SFWYDRYHFE FNTTY