YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	bgs2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.18
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	525	0.87
Transmembrane Helix	526	550	0.84
Cytoplasmic	551	565	0.78
Transmembrane Helix	566	586	0.94
Non-Cytoplasmic	587	599	0.80
Transmembrane Helix	600	624	0.85
Cytoplasmic	625	652	0.79
Transmembrane Helix	653	669	0.63
Non-Cytoplasmic	670	682	0.47
Transmembrane Helix	683	706	0.53
Cytoplasmic	707	709	0.51
Transmembrane Helix	710	732	0.63
Non-Cytoplasmic	733	737	0.47
Transmembrane Helix	738	758	0.80
Cytoplasmic	759	1332	0.90
Transmembrane Helix	1333	1355	0.79
Non-Cytoplasmic	1356	1393	0.78
Transmembrane Helix	1394	1411	0.95
Cytoplasmic	1412	1466	0.49
Transmembrane Helix	1467	1501	0.58
Non-Cytoplasmic	1502	1502	0.34
Transmembrane Helix	1503	1526	0.79
Cytoplasmic	1527	1595	0.55
Transmembrane Helix	1596	1618	0.89
Non-Cytoplasmic	1619	1636	0.55
Transmembrane Helix	1637	1661	0.87
Cytoplasmic	1662	1672	0.48
Transmembrane Helix	1673	1693	0.93
Non-Cytoplasmic	1694	1701	0.45
Transmembrane Helix	1702	1722	0.87
Cytoplasmic	1723	1742	0.50
Transmembrane Helix	1743	1758	0.18
Non-Cytoplasmic	1759	1778	0.58
Transmembrane Helix	1779	1798	0.94
Cytoplasmic	1799	1834	0.61
Transmembrane Helix	1835	1857	0.89
Non-Cytoplasmic	1858	1894	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWHEQDYGF GTSSENSKIN SDEFEDSMDV TEFNNPGEES TYPQANSWND SNKTKDIAEY  60
   61 YDYSWSGQRE ANQQIPQPVP VQPRYPDEQN FSMNGETYPS EAYDYDYSGQ EEAINAMNIL 120
  121 QGNLERSNEY YSEGVPYSEE DLGAYAGGMT EDDQMYSNFN ETGEFNLDIG SSKFSYLNAK 180
  181 NPYPAWIAEN SIPITAENIL EIFQELQAKF GFQYDSMLNM YDFFMVLLDS RSSRMDAENA 240
  241 LKSLHADYIG GRNANYRKWY FSSSMDIDDS VGLQNCKFSS NGPKIKQAKK KQKRKSNKAE 300
  301 TEGTNEPETS VQIDPLNVSM ENWENEMKNL DCETQVRQLA LYLLCWGEAN NIRFCPECLC 360
  361 FIFKLANDFM QSEDYAKSEP IEDDCFYLDN VITPLYEFIR DQQFELLDGK LVRRERDHAQ 420
  421 IIGYDDINQL FWYPEGIARI VTVDGTQLIT LPKWERFHKL SEVDWKKAFY KTFYESRSWF 480
  481 HLVTNFNRIW VIHFTTYWYY TVFNSPTIIE KNFRQSVGPK PIPSCHWTSV SLGGAVATLL 540
  541 MLLATIFEWI HVPRKFPGSR PLLKRFLILI LFFILNVAPT VFVFGFSTEE QQRTTGRLTV 600
  601 AIVHFIFSVF TFIYFSLVPL NNLFHRAYKS SSRTHLANRY FTADYARLQI NDMCVSWGLW 660
  661 LLVFGAKFTE SYFFLSLSFR DPILVLSTMK PYLCNITFLG SHLCIWQPKI LLGIMYVTDL 720
  721 VLFFLDTYLW YILVNTVFSV ARSFFLGISI WTPWRNIFAR MPKRIYSKIL CTPEVDSSYK 780
  781 PKVLVSQIWN SIIISLYREH LLAIEHVQRL IYHQVNSLDG DGSKTLKTPT FFVSQEDSSF 840
  841 NTEYFPAHSE AERRLSFFAQ SLATPIPEPI PVDAMPTFTV LVPHYGEKIL LSLKEIIREQ 900
  901 DKLSRVTLLE YLKQLHANEW KCFVRDTKIL AEEDALSNQD LNSQDESMKA EQLHKKFDDL 960
  961 PFYCIGFKNA TPEYTLRTRI WASLRSQTLY RTVSGFMNYS RAIKLLYRVE NPDVAQLFEG1020
 1021 QMDVLEYELD RMASRKFKMC VSMQRYAKFT ADEIENTEFI LRAYPDLLIA YLDEDPPKEG1080
 1081 ETTPQLYAAL IDGYSELDEN KKRKPKYRIK LSGNPILGDG KSDNQNLSLP FYRGEYIQLI1140
 1141 DANQDNYLEE CLKIRSILAE FEAFDLKTND PYAETNALYQ NNPVAIMGAR EYIFSENIGI1200
 1201 LGDVAAGKEQ TFGTLFARTM AQIGGKLHYG HPDFLNAIYM TTRGGVSKAQ KGLHVNEDIY1260
 1261 AGMTALQRGG RIKHCEYYQC GKGRDLGFGS ILNFTTKIGT GMGEQMVSRE YYYLGTQLPF1320
 1321 DRFLSFYYAH PGFHINNIFI MLSVQLFMVV LVNLGGMYHV VTVCDYDHDQ KLTVPMRPEG1380
 1381 CYQLNPVVNW LKRCIISIFI VFFISFVPLT VQELTERGAW RALTRLGKHF ASFSPMFEVF1440
 1441 ACQTYAQSVI ANLSFGGARY IGTGRGFATA RLSFSLLFSR FAGPSIYLGS RTLLMLLFGT1500
 1501 MTVWIPHLIY FWISTLAMCI SPFIFNPHQF SWTDFFVDYR EFIRWLSRGN SRSHINSWIG1560
 1561 YCRLTRTRIT GYKRRLLGVP VSKGVIDTSR AHFTNMFFTE IFIPLMLVPL TLVSYFFIDS1620
 1621 QPGNPDPSKV TNPILRILIL AFLPIIVAAV VSMTFAGMAC MMGPLLDLCC KKFGAVLAAL1680
 1681 AHGITVFMFI IVFEVSWYLE AWCLAKTVLS MLCIIAIQRF FFKIIQVLFL TRELKHDGTN1740
 1741 LAWWTGKWYS RGLGFHALSQ PSRELICKMT ELNFFAADFF LCHLLLFLML PVLLIPFIDR1800
 1801 WHSMMLFWLK PSKQIRPPIY SMRQNRLRKK IVQRYGTMFF LLLIAFLALI IIPLVVAKDL1860
 1861 LANFEMDILR TYGLMQPRDT NWTENGTNWT TVNE