YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BFR1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	538	0.90
Transmembrane Helix	539	560	0.95
Cytoplasmic	561	568	0.81
Transmembrane Helix	569	589	0.90
Non-Cytoplasmic	590	623	0.80
Transmembrane Helix	624	642	0.89
Cytoplasmic	643	650	0.77
Transmembrane Helix	651	673	0.91
Non-Cytoplasmic	674	681	0.77
Transmembrane Helix	682	702	0.91
Cytoplasmic	703	786	0.89
Transmembrane Helix	787	808	0.80
Non-Cytoplasmic	809	1219	0.82
Transmembrane Helix	1220	1241	0.83
Cytoplasmic	1242	1252	0.53
Transmembrane Helix	1253	1271	0.92
Non-Cytoplasmic	1272	1295	0.64
Transmembrane Helix	1296	1321	0.85
Cytoplasmic	1322	1336	0.65
Transmembrane Helix	1337	1358	0.86
Non-Cytoplasmic	1359	1366	0.51
Transmembrane Helix	1367	1385	0.81
Cytoplasmic	1386	1490	0.51
Transmembrane Helix	1491	1512	0.94
Non-Cytoplasmic	1513	1530	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQNSDTTHG QALGSTLNHT TEVTRISNSS DHFEDSSSNV DESLDSSNPS SNEKASHTNE  60
   61 EYRSKGNQSY VPSSSNEPSP ESSSNSDSSS SDDSSVDRLA GDPFELGENF NLKHYLRAYK 120
  121 DSLQRDDIIT RSSGVCMRDH SVYGVGSGYE FLKTFPDIFL QPYRAITEKQ VVEKAILSHC 180
  181 HALANAGELV MVLGQPGSGC STFLRSVTSD TVHYKRVEGT THYDGIDKAD MKKFFPGDLL 240
  241 YSGENDVHFP SLTTAETLDF AAKCRTPNNR PCNLTRQEYV SRERHLIATA FGLTHTFNTK 300
  301 VGNDFVRGVS GGERKRVTIS EGFATRPTIA CWDNSTRGLD SSTAFEFVNV LRTCANELKM 360
  361 TSFVTAYQAS EKIYKLFDRI CVLYAGRQIY YGPADKAKQY FLDMGFDCHP RETTPDFLTA 420
  421 ISDPKARFPR KGFENRVPRT PDEFEQMWRN SSVYADLMAE MESYDKRWTE TTPASSEAPE 480
  481 KDNFGSDISA TTKHELYRQS AVAEKSKRVK DTSPYTVTFS QQLWYCLARS WERYINDPAY 540
  541 IGSMAFAFLF QSLIIGSIFY DMKLNTVDVF SRGGVLFFSI LFCALQSLSE IANMFSQRPI 600
  601 IAKHRASALY HPAADVISSL IVDLPFRFIN ISVFSIVLYF LTNLKRTAGG FWTYFLFLFI 660
  661 GATCMSAFFR SLAGIMPNVE SASALGGIGV LAIAIYTGYA IPNIDVGWWF RWIAYLDPLQ 720
  721 FGFESLMINE FKARQFECSQ LIPYGSGYDN YPVANKICPV TSAEPGTDYV DGSTYLYISF 780
  781 NYKTRQLWRN LAIIIGYYAF LVFVNIVASE TLNFNDLKGE YLVFRRGHAP DAVKAAVNEG 840
  841 GKPLDLETGQ DTQGGDVVKE SPDNEEELNK EYEGIEKGHD IFSWRNLNYD IQIKGEHRRL 900
  901 LNGVQGFVVP GKLTALMGES GAGKTTLLNV LAQRVDTGVV TGDMLVNGRG LDSTFQRRTG 960
  961 YVQQQDVHIG ESTVREALRF SAALRQPASV PLSEKYEYVE SVIKLLEMES YAEAIIGTPG1020
 1021 SGLNVEQRKR ATIGVELAAK PALLLFLDEP TSGLDSQSAW SIVCFLRKLA DAGQAILCTI1080
 1081 HQPSAVLFDQ FDRLLLLQKG GKTVYFGDIG EHSKTLLNYF ESHGAVHCPD DGNPAEYILD1140
 1141 VIGAGATATT NRDWHEVWNN SEERKAISAE LDKINASFSN SEDKKTLSKE DRSTYAMPLW1200
 1201 FQVKMVMTRN FQSYWREPSI LMSKLALDIF AGLFIGFTFY NQGLGVQNIQ NKLFAVFMAT1260
 1261 VLAVPLINGL QPKFIELRNV FEVREKPSNI YSWVAFVFSA IIVEIPFNLV FGTLFFLCWF1320
 1321 YPIKFYKHIH HPGDKTGYAW LLYMFFQMYF STFGQAVASA CPNAQTASVV NSLLFTFVIT1380
 1381 FNGVLQPNSN LVGFWHWMHS LTPFTYLIEG LLSDLVHGLP VECKSHEMLT INPPSGQTCG1440
 1441 EYMSAFLTNN TAAGNLLNPN ATTSCSYCPY QTADQFLERF SMRYTHRWRN LGIFVGYVFF1500
 1501 NIFAVLLLFY VFRVMKLRST WLGKKITGTG