YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BEM46_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSLSSAIF NVLKYSGMAS LAVTLIALGF LYKYQKTLVY PSAFPQGSRE NVPTPKEFNM  60
   61 EYERIELRTR DKVTLDSYLM LQSESPESRP TLLYFHANAG NMGHRLPIAR VFYSALNMNV 120
  121 FIISYRGYGK STGSPSEAGL KIDSQTALEY LMEHPICSKT KIVVYGQSIG GAVAIALTAK 180
  181 NQDRISALIL ENTFTSIKDM IPTVFPYGGS IISRFCTEIW SSQDEIRKIK KLPVLFLSGE 240
  241 KDEIVPPPQM VLLFGLCGSA KKKFHSFPKC THNDTCLGDG YFQVIADFLA ENDINTPAS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.58
Transmembrane Helix	12	32	0.74
Non-Cytoplasmic	33	299	0.79