YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	atp6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFITSPLEQF ELNNYFGFYL FNYHFDFSNF GFYLGLSALI AISLAIINLT PYGSGAKIVP  60
   61 QKFGIAMEAI YFTMLNLVEN QIHSSKTVSG QSYFPFIWSL FVLILFSNLL RLIPYGYATT 120
  121 AQLIFTLGLS ISILIGATIL GLQQHKAKVF GLFLPSGTPT PLIPLLVLIE FVSYIARGLS 180
  181 LGIRLGANII AGHLTMSILG GLIFTFMGLN LITFIIGFLP ITVLVAISLL EFGIAFIQAY 240
  241 VFAILTCGFI NDSLNLH

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.66
Transmembrane Helix	30	52	0.88
Cytoplasmic	53	62	0.54
Transmembrane Helix	63	78	0.55
Non-Cytoplasmic	79	92	0.54
Transmembrane Helix	93	113	0.91
Cytoplasmic	114	120	0.54
Transmembrane Helix	121	142	0.92
Non-Cytoplasmic	143	151	0.56
Transmembrane Helix	152	181	0.69
Cytoplasmic	182	188	0.50
Transmembrane Helix	189	219	0.76
Non-Cytoplasmic	220	220	0.29
Transmembrane Helix	221	250	0.72
Cytoplasmic	251	257	0.55