YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC13G7.05
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTPRILIT PSPLSDISTT INKPNVHPSM SLLKALPECR LVVKSKGDKN NANVVEFPLD  60
   61 RHKQLLIAGK VYHDYKFKPR KSIFDRVTDP NYFAKSEFRG FYVLFWLSMA AWVLQLYARS 120
  121 YWQRDTLLGL PLARQVFRQF FVLFSSDFLM ICLSFFSYGL QVCIEKNMIR WANLGYTIQT 180
  181 LWQGFYMVLA VYWVKHRDFP IVQCVFFTLH CAVLIMKQFS YSHHMGYISE IRILHNEYEK 240
  241 LLKFVRECLN STEKDEKYTF ELTFPNKPAE TISTLQAEEI VALTAKYLSR QMRSEVGNVV 300
  301 YPDNINFFNY VDYLLVPSLV YSMEFPRVAH FRWHYMAFKA GSTFGLLALT LALVDWYFVP 360
  361 SAVAVKDLDF IGKLRIAPLL MNKIMFPAII LYLIMFYLIF DCILNAFAEI TKFADRGFYG 420
  421 AWWNTVTWDE FSREWNKPVH VFLMRHVYHS SISGFKLKKS HAVLLTFLIS ALVHEFVMLL 480
  481 ATGKFRCYIL TFQLLQIPLY DLQQMFAFKK RDILGNVFFW IGMFTGPSFL CILYIVF

Type	Start	End	Confidence
Cytoplasmic	1	99	0.96
Transmembrane Helix	100	119	0.91
Non-Cytoplasmic	120	139	0.86
Transmembrane Helix	140	160	0.94
Cytoplasmic	161	171	0.77
Transmembrane Helix	172	193	0.85
Non-Cytoplasmic	194	198	0.81
Transmembrane Helix	199	219	0.85
Cytoplasmic	220	334	0.95
Transmembrane Helix	335	354	0.90
Non-Cytoplasmic	355	383	0.84
Transmembrane Helix	384	408	0.82
Cytoplasmic	409	461	0.92
Transmembrane Helix	462	482	0.72
Non-Cytoplasmic	483	512	0.45
Transmembrane Helix	513	536	0.88
Cytoplasmic	537	537	0.44