YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	alg6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.93
Transmembrane Helix	25	44	0.95
Non-Cytoplasmic	45	88	0.88
Transmembrane Helix	89	108	0.89
Cytoplasmic	109	127	0.80
Transmembrane Helix	128	149	0.88
Non-Cytoplasmic	150	164	0.67
Transmembrane Helix	165	179	0.59
Cytoplasmic	180	182	0.33
Transmembrane Helix	183	202	0.53
Non-Cytoplasmic	203	205	0.51
Transmembrane Helix	206	236	0.67
Cytoplasmic	237	247	0.70
Transmembrane Helix	248	268	0.96
Non-Cytoplasmic	269	315	0.86
Transmembrane Helix	316	337	0.91
Cytoplasmic	338	342	0.77
Transmembrane Helix	343	363	0.87
Non-Cytoplasmic	364	408	0.72
Transmembrane Helix	409	429	0.79
Cytoplasmic	430	436	0.65
Transmembrane Helix	437	456	0.93
Non-Cytoplasmic	457	464	0.73
Transmembrane Helix	465	486	0.93
Cytoplasmic	487	506	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSEFENGAP VQQFVSRFRS YSSKFLFFPC LIMSLVFMQW LISIGPYSGY NTPPMYGDFE  60
   61 AQRHWMELTL HTPVSQWYFR DLQWWGLDYP PLTAYVSWFF GIIGHYFFNP EWFADVTSRG 120
  121 FESLELKLFM RSTVIASHLL ILVPPLMFYS KWWSRRIPNF VDRNASLIMV LFQPALLLID 180
  181 HGHFQYNCVM LGLVMYAIAN LLKNQYVAAT FFFCLALTFK QMALYFAPPI FFYLLGTCVK 240
  241 PKIRFSRFIL LSVTVVFTFS LILFPWIYMD YKTLLPQILH RVFPFARGLW EDKVANFWCT 300
  301 LNTVFKIREV FTLHQLQVIS LIFTLISILP SCVILFLYPR KRLLALGFAS ASWGFFLFSF 360
  361 QVHEKSVLLP LLPTSILLCH GNITTKPWIA LANNLAVFSL WPLLKKDGLG LQYFTLVLMW 420
  421 NWIGDMVVFS KNVLFRFIQL SFYVGMIVIL GIDLFIPPPS RYPDLWVILN VTLSFAGFFT 480
  481 IYLWTLGRLL HISSKLSTDL RNKKEA