YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	anc1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.78
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSSAAAAA STPVNANTIT ETKNSTFFFD FMMGGVSAAV SKTAAAPIER VKLLIQNQDE  60
   61 MIRAGRLSHR YKGIGECFKR TAAEEGVISL WRGNTANVLR YFPTQALNFA FKDKFKKMFG 120
  121 YKKERDGYAK WFAGNLASGG AAGAASLLFV YSLDYARTRL ANDAKSAKKG GERQFNGLVD 180
  181 VYRKTYRSDG LRGLYRGFGP SVVGIVVYRG LYFGMYDTLK PVVLVGPLEG NFLASFLLGW 240
  241 AVTTGSGVAS YPLDTIRRRM MMTSGEAVKY SSSFECGRQI LAKEGARSFF KGAGANILRG 300
  301 VAGAGVLSIY DQVQLLMFGK KF

Type	Start	End	Confidence
Signal Peptide	1	16	0.78
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	130	0.84
Transmembrane Helix	131	151	0.80
Cytoplasmic	152	192	0.89
Transmembrane Helix	193	212	0.90
Non-Cytoplasmic	213	231	0.91
Transmembrane Helix	232	253	0.93
Cytoplasmic	254	294	0.92
Transmembrane Helix	295	310	0.55
Non-Cytoplasmic	311	322	0.48