YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0309677, CG1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.82
Transmembrane Helix	10	25	0.94
Non-Cytoplasmic	26	42	0.74
Transmembrane Helix	43	64	0.90
Cytoplasmic	65	75	0.93
Transmembrane Helix	76	99	0.87
Non-Cytoplasmic	100	106	0.78
Transmembrane Helix	107	126	0.91
Cytoplasmic	127	132	0.84
Transmembrane Helix	133	151	0.94
Non-Cytoplasmic	152	157	0.70
Transmembrane Helix	158	177	0.86
Cytoplasmic	178	188	0.82
Transmembrane Helix	189	210	0.84
Non-Cytoplasmic	211	239	0.80
Transmembrane Helix	240	261	0.83
Cytoplasmic	262	271	0.61
Transmembrane Helix	272	299	0.74
Non-Cytoplasmic	300	373	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGKRTGSRH IAVVLLMCLF WYVISSSNNV IGKMVLNEFP FPMTVTLVQL CSITLYSGPF  60
   61 FNLWRIRKYQ DIPRPYYYRL IVPLALGKLL ASVTSHISLW KVPVSYAHTV KATMPLFTVV 120
  121 LTRVFFGEKQ PTLVYLSLLP IITGVGIATV TEISFDMMGL ISALISTMGF SMQNIFSKKV 180
  181 LKDTNIHHLR LLHLLGKLSL FIFLPLWLYM DSFAVFRHTA IKNLDYRVIA LLFADGVLNW 240
  241 LQNIIAFSVL SLVTPLTYAV ASASKRIFVI AVSLLILGNP VTWVNCVGMT LAIVGVLCYN 300
  301 RAKQLTRGRE QPTLPLSQTS YVKYSPLEQQ ADPYYRGSVN GKLSNGLHRT PGNSLLANGS 360
  361 GMPSGTATRL LFV