YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Syx16-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSRNLTEVF VIMRNNASKN RNHYDDRRGS DAERLLKHSV REAEEGLELQ DDYGTPPAWL  60
   61 DKFEEAQYTM SKIKPKLDEL GSLHARHLLR PAFDDQRDDE CDIEVLSQIV SKLITSTHRH 120
  121 IQCVRSSIGV GSKMEQCLTV NAVHCALLQL QELTVKFRAS QNAYLLQLNS REERSQKYFD 180
  181 DGGGAGAGDV FTNVELGEQS AENFVDSFDN FLQPPAEGKS GNGYLFEDDE QAIDDHFQRP 240
  241 PASRMTQQQL LLFEEENTRV AQHREQEVTK IVKSIYDLND IFKDLGHMVQ EQGTVLDRID 300
  301 YNVEQTQTRV SEGLRQLHKA EMYQRKNRKM CVILVLAAVT FFMLLLLILT KL

Type	Start	End	Confidence
Cytoplasmic	1	329	0.90
Transmembrane Helix	330	350	0.94
Non-Cytoplasmic	351	352	0.84