YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or19b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDISKVDSTR ALVNHWRIFR IMGIHPPGKR TFWGRHYTAY SMVWNVTFHI CIWVSFSVNL  60
   61 LQSNSLETFC ESLCVTMPHT LYMLKLINVR RMRGEMISSH WLLRLLDKRL GCADERQIIM 120
  121 AGIERAEFIF RTIFRGLACT VVLGIIYISA SSEPTLMYPT WIPWNWKDST SAYLATAMLH 180
  181 TTALMANATL VLNLSSYPGT YLILVSVHTK ALALRVSKLG YGAPLPAVRM QAILVGYIHD 240
  241 HQIILRLFKS LERSLSMTCF LQFFSTACAQ CTICYFLLFG NVGIMRFMNM LFLLVILTTE 300
  301 TLLLCYTAEL PCKEGESLLT AVYSCNWLSQ SVNFRRLLLL MLARCQIPMI LVSGVIVPIS 360
  361 MKTFTVMIKG AYTMLTLLNE IRKTSLE

Type	Start	End	Confidence
Cytoplasmic	1	36	0.91
Transmembrane Helix	37	57	0.82
Non-Cytoplasmic	58	67	0.60
Transmembrane Helix	68	86	0.78
Cytoplasmic	87	131	0.93
Transmembrane Helix	132	151	0.93
Non-Cytoplasmic	152	171	0.89
Transmembrane Helix	172	194	0.76
Cytoplasmic	195	257	0.74
Transmembrane Helix	258	279	0.92
Non-Cytoplasmic	280	286	0.64
Transmembrane Helix	287	308	0.77
Cytoplasmic	309	339	0.72
Transmembrane Helix	340	366	0.71
Non-Cytoplasmic	367	387	0.65